Detailed information of SNP:
|
SNP ID:
sf1225373637(Gbrowse)
Chromosome: chr12 Position: 25373637 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1396 | 95.70% | 4.30% |
| All Indica | 794 | 92.57% | 7.43% |
| All Japonica | 481 | 100.00% | 0.00% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 372 | 86.56% | 13.44% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 209 | 96.17% | 3.83% |
| Temperate Japonica | 321 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1225373637 | G->A | INTERGENIC | None |