Detailed information of SNP:
|
SNP ID:
sf1225442940(Gbrowse)
Chromosome: chr12 Position: 25442940 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1400 | 55.21% | 44.79% |
| All Indica | 797 | 86.45% | 13.55% |
| All Japonica | 480 | 12.29% | 87.71% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 373 | 81.23% | 18.77% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 211 | 88.15% | 11.85% |
| Temperate Japonica | 323 | 13.62% | 86.38% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 63 | 19.05% | 80.95% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1225442940 | C->T | INTERGENIC | None |