Detailed information of SNP:
|
SNP ID:
sf1225493832(Gbrowse)
Chromosome: chr12 Position: 25493832 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1394 | 64.56% | 35.44% |
| All Indica | 792 | 86.62% | 13.38% |
| All Japonica | 482 | 36.10% | 63.90% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 370 | 92.70% | 7.30% |
| Indica II | 212 | 88.68% | 11.32% |
| Indica Intermediate | 210 | 73.81% | 26.19% |
| Temperate Japonica | 323 | 18.58% | 81.42% |
| Tropical Japonica | 91 | 95.60% | 4.40% |
| Japonica Intermediate | 68 | 39.71% | 60.29% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 39 | 71.79% | 28.21% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1225493832 | A->T | INTERGENIC | None |