Detailed information of SNP:
|
SNP ID:
sf1225540733(Gbrowse)
Chromosome: chr12 Position: 25540733 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 92.59% | 7.41% |
| All Indica | 798 | 92.36% | 7.64% |
| All Japonica | 496 | 94.96% | 5.04% |
| Aus | 67 | 74.63% | 25.37% |
| Indica I | 375 | 97.33% | 2.67% |
| Indica II | 213 | 92.02% | 7.98% |
| Indica Intermediate | 210 | 83.81% | 16.19% |
| Temperate Japonica | 335 | 94.03% | 5.97% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 92.54% | 7.46% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1225540733 | T->G | INTERGENIC | None |