Detailed information of SNP:
|
SNP ID:
sf1225552846(Gbrowse)
Chromosome: chr12 Position: 25552846 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1386 | 74.68% | 25.32% |
| All Indica | 767 | 62.97% | 37.03% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 26.87% | 73.13% |
| Indica I | 366 | 86.07% | 13.93% |
| Indica II | 207 | 28.50% | 71.50% |
| Indica Intermediate | 194 | 56.19% | 43.81% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1225552846 | A->C | INTERGENIC | None |