Detailed information of SNP:
|
SNP ID:
sf1225560791(Gbrowse)
Chromosome: chr12 Position: 25560791 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 70.42% | 29.58% |
| All Indica | 799 | 56.20% | 43.80% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 62 | 20.97% | 79.03% |
| Indica I | 375 | 82.13% | 17.87% |
| Indica II | 213 | 19.72% | 80.28% |
| Indica Intermediate | 211 | 46.92% | 53.08% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1225560791 | T->C | LOC_Os12g41270(LOC_Os12g41270.1) | INTRON |