Detailed information of SNP:
|
SNP ID:
sf1225597876(Gbrowse)
Chromosome: chr12 Position: 25597876 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1173 | 95.06% | 4.94% |
| All Indica | 684 | 99.71% | 0.29% |
| All Japonica | 370 | 85.68% | 14.32% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 295 | 100.00% | 0.00% |
| Indica II | 199 | 100.00% | 0.00% |
| Indica Intermediate | 190 | 98.95% | 1.05% |
| Temperate Japonica | 243 | 92.18% | 7.82% |
| Tropical Japonica | 73 | 71.23% | 28.77% |
| Japonica Intermediate | 54 | 75.93% | 24.07% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 92.11% | 7.89% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1225597876 | G->A | INTERGENIC | None |