Detailed information of SNP:
|
SNP ID:
sf1225730781(Gbrowse)
Chromosome: chr12 Position: 25730781 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 70.73% | 29.27% |
| All Indica | 796 | 53.64% | 46.36% |
| All Japonica | 492 | 95.33% | 4.67% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 372 | 51.08% | 48.92% |
| Indica II | 213 | 45.07% | 54.93% |
| Indica Intermediate | 211 | 66.82% | 33.18% |
| Temperate Japonica | 330 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 82.98% | 17.02% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1225730781 | G->A | INTERGENIC | None |