Detailed information of SNP:
|
SNP ID:
sf1225764562(Gbrowse)
Chromosome: chr12 Position: 25764562 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1404 | 65.24% | 34.76% |
| All Indica | 784 | 47.83% | 52.17% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 363 | 57.30% | 42.70% |
| Indica II | 212 | 50.94% | 49.06% |
| Indica Intermediate | 209 | 28.23% | 71.77% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1225764562 | T->A | INTERGENIC | None |