Detailed information of SNP:
|
SNP ID:
sf1225809319(Gbrowse)
Chromosome: chr12 Position: 25809319 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1409 | 62.03% | 37.97% |
| All Indica | 789 | 94.17% | 5.83% |
| All Japonica | 497 | 6.44% | 93.56% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 368 | 91.03% | 8.97% |
| Indica II | 211 | 96.68% | 3.32% |
| Indica Intermediate | 210 | 97.14% | 2.86% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 10.64% | 89.36% |
| Japonica Intermediate | 68 | 23.53% | 76.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1225809319 | C->T | INTERGENIC | None |