Detailed information of SNP:
SNP ID:
sf1225822329(Gbrowse)
Chromosome: chr12 Position: 25822329 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
---|---|---|---|
All | 1419 | 62.30% | 37.70% |
All Indica | 799 | 93.99% | 6.01% |
All Japonica | 497 | 6.64% | 93.36% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 375 | 91.20% | 8.80% |
Indica II | 213 | 96.24% | 3.76% |
Indica Intermediate | 211 | 96.68% | 3.32% |
Temperate Japonica | 335 | 1.79% | 98.21% |
Tropical Japonica | 94 | 11.70% | 88.30% |
Japonica Intermediate | 68 | 23.53% | 76.47% |
Group VI/Aromatic | 14 | 92.86% | 7.14% |
Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1225822329 | C->T | INTERGENIC | None |