Detailed information of SNP:
|
SNP ID:
sf1225828838(Gbrowse)
Chromosome: chr12 Position: 25828838 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1388 | 96.33% | 3.67% |
| All Indica | 771 | 94.68% | 5.32% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 369 | 98.92% | 1.08% |
| Indica II | 202 | 90.59% | 9.41% |
| Indica Intermediate | 200 | 91.00% | 9.00% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 12 | 66.67% | 33.33% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1225828838 | C->T | LOC_Os12g41740(LOC_Os12g41740.1) | Non-Synonymous SNP |