Detailed information of SNP:
|
SNP ID:
sf1225828865(Gbrowse)
Chromosome: chr12 Position: 25828865 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1389 | 94.96% | 5.04% |
| All Indica | 774 | 93.28% | 6.72% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 90.91% | 9.09% |
| Indica I | 369 | 98.64% | 1.36% |
| Indica II | 204 | 88.73% | 11.27% |
| Indica Intermediate | 201 | 88.06% | 11.94% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 11 | 36.36% | 63.64% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1225828865 | A->G | LOC_Os12g41740(LOC_Os12g41740.1) | Non-Synonymous SNP |