Detailed information of SNP:
|
SNP ID:
sf1225838347(Gbrowse)
Chromosome: chr12 Position: 25838347 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1276 | 87.62% | 12.38% |
| All Indica | 657 | 76.56% | 23.44% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 291 | 71.13% | 28.87% |
| Indica II | 191 | 80.63% | 19.37% |
| Indica Intermediate | 175 | 81.14% | 18.86% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1225838347 | G->T | INTERGENIC | None |