Detailed information of SNP:
|
SNP ID:
sf1225924411(Gbrowse)
Chromosome: chr12 Position: 25924411 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 58.97% | 41.03% |
| All Indica | 799 | 91.36% | 8.64% |
| All Japonica | 497 | 1.41% | 98.59% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 86.13% | 13.87% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 39 | 51.28% | 48.72% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1225924411 | T->C | INTERGENIC | None |