Detailed information of SNP:
|
SNP ID:
sf1225950382(Gbrowse)
Chromosome: chr12 Position: 25950382 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 57.62% | 42.38% |
| All Indica | 799 | 91.11% | 8.89% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 85.87% | 14.13% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 43.90% | 56.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1225950382 | T->G | INTERGENIC | None |