Detailed information of SNP:
|
SNP ID:
sf1225954887(Gbrowse)
Chromosome: chr12 Position: 25954887 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 57.66% | 42.34% |
| All Indica | 797 | 91.22% | 8.78% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 85.83% | 14.17% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 210 | 94.29% | 5.71% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1225954887 | G->C | INTERGENIC | None |