Detailed information of SNP:
SNP ID:
sf1226005810(Gbrowse)
Chromosome: chr12 Position: 26005810 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1416 | 59.32% | 40.68% |
All Indica | 798 | 93.98% | 6.02% |
All Japonica | 497 | 0.60% | 99.40% |
Aus | 67 | 97.01% | 2.99% |
Indica I | 374 | 90.64% | 9.36% |
Indica II | 213 | 97.65% | 2.35% |
Indica Intermediate | 211 | 96.21% | 3.79% |
Temperate Japonica | 335 | 0.30% | 99.70% |
Tropical Japonica | 94 | 1.06% | 98.94% |
Japonica Intermediate | 68 | 1.47% | 98.53% |
Group VI/Aromatic | 14 | 21.43% | 78.57% |
Intermediate | 40 | 47.50% | 52.50% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1226005810 | T->C | LOC_Os12g41990(LOC_Os12g41990.1) | Non-Synonymous SNP |