Detailed information of SNP:
|
SNP ID:
sf1226009409(Gbrowse)
Chromosome: chr12 Position: 26009409 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 59.03% | 40.97% |
| All Indica | 799 | 93.49% | 6.51% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 89.87% | 10.13% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1226009409 | T->C | INTERGENIC | None |