Detailed information of SNP:
|
SNP ID:
sf1226018161(Gbrowse)
Chromosome: chr12 Position: 26018161 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1384 | 97.40% | 2.60% |
| All Indica | 797 | 99.75% | 0.25% |
| All Japonica | 464 | 93.53% | 6.47% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 306 | 99.02% | 0.98% |
| Tropical Japonica | 93 | 84.95% | 15.05% |
| Japonica Intermediate | 65 | 80.00% | 20.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1226018161 | C->A | INTERGENIC | None |