Detailed information of SNP:
|
SNP ID:
sf1226022676(Gbrowse)
Chromosome: chr12 Position: 26022676 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1328 | 94.65% | 5.35% |
| All Indica | 710 | 90.00% | 10.00% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 320 | 85.00% | 15.00% |
| Indica II | 195 | 95.38% | 4.62% |
| Indica Intermediate | 195 | 92.82% | 7.18% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1226022676 | G->A | LOC_Os12g42020(LOC_Os12g42020.1) | Synonymous |