Detailed information of SNP:
SNP ID:
sf1226032318(Gbrowse)
Chromosome: chr12 Position: 26032318 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1419 | 59.13% | 40.87% |
All Indica | 799 | 93.74% | 6.26% |
All Japonica | 497 | 0.40% | 99.60% |
Aus | 67 | 95.52% | 4.48% |
Indica I | 375 | 90.13% | 9.87% |
Indica II | 213 | 97.65% | 2.35% |
Indica Intermediate | 211 | 96.21% | 3.79% |
Temperate Japonica | 335 | 0.00% | 100.00% |
Tropical Japonica | 94 | 1.06% | 98.94% |
Japonica Intermediate | 68 | 1.47% | 98.53% |
Group VI/Aromatic | 14 | 21.43% | 78.57% |
Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1226032318 | T->C | INTERGENIC | None |