Detailed information of SNP:



SNP ID: sf1226135902(Gbrowse)

Chromosome: chr12

Position: 26135902
Major allele: C

Minor allele: A

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of A(minor allele)
All1419 96.90% 3.10%
All Indica799 98.75% 1.25%
All Japonica497 93.16% 6.84%
Aus67 100.00% 0.00%
Indica I375 97.33% 2.67%
Indica II213 100.00% 0.00%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica335 90.15% 9.85%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 98.53% 1.47%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 100.00% 0.00%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1226135902 C->A INTERGENIC None