Detailed information of SNP:
|
SNP ID:
sf1226171586(Gbrowse)
Chromosome: chr12 Position: 26171586 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 64.64% | 35.36% |
| All Indica | 799 | 96.87% | 3.13% |
| All Japonica | 496 | 10.69% | 89.31% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 91.00% | 9.00% |
| Temperate Japonica | 335 | 14.93% | 85.07% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 67 | 2.99% | 97.01% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1226171586 | C->T | INTERGENIC | None |