Detailed information of SNP:
|
SNP ID:
sf1226199504(Gbrowse)
Chromosome: chr12 Position: 26199504 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 59.17% | 40.83% |
| All Indica | 799 | 93.24% | 6.76% |
| All Japonica | 497 | 0.80% | 99.20% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 94.40% | 5.60% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 211 | 90.52% | 9.48% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1226199504 | G->A | INTERGENIC | None |