Detailed information of SNP:
|
SNP ID:
sf1226201438(Gbrowse)
Chromosome: chr12 Position: 26201438 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1411 | 92.49% | 7.51% |
| All Indica | 799 | 98.37% | 1.63% |
| All Japonica | 490 | 81.22% | 18.78% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 333 | 87.69% | 12.31% |
| Tropical Japonica | 90 | 46.67% | 53.33% |
| Japonica Intermediate | 67 | 95.52% | 4.48% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1226201438 | T->C | INTERGENIC | None |