Detailed information of SNP:
|
SNP ID:
sf1226231553(Gbrowse)
Chromosome: chr12 Position: 26231553 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 52.54% | 47.46% |
| All Indica | 799 | 83.23% | 16.77% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 375 | 92.53% | 7.47% |
| Indica II | 213 | 70.42% | 29.58% |
| Indica Intermediate | 211 | 79.62% | 20.38% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 34.15% | 65.85% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1226231553 | A->G | INTERGENIC | None |