Detailed information of SNP:
|
SNP ID:
sf1226290742(Gbrowse)
Chromosome: chr12 Position: 26290742 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1148 | 51.66% | 48.34% |
| All Indica | 730 | 45.62% | 54.38% |
| All Japonica | 303 | 73.60% | 26.40% |
| Aus | 66 | 9.09% | 90.91% |
| Indica I | 340 | 41.76% | 58.24% |
| Indica II | 191 | 52.88% | 47.12% |
| Indica Intermediate | 199 | 45.23% | 54.77% |
| Temperate Japonica | 185 | 75.14% | 24.86% |
| Tropical Japonica | 71 | 61.97% | 38.03% |
| Japonica Intermediate | 47 | 85.11% | 14.89% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 35 | 60.00% | 40.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1226290742 | A->G | LOC_Os12g42340(LOC_Os12g42340.1) | INTRON |