Detailed information of SNP:
|
SNP ID:
sf1226346598(Gbrowse)
Chromosome: chr12 Position: 26346598 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1329 | 53.88% | 46.12% |
| All Indica | 795 | 50.69% | 49.31% |
| All Japonica | 416 | 65.62% | 34.38% |
| Aus | 66 | 9.09% | 90.91% |
| Indica I | 372 | 46.51% | 53.49% |
| Indica II | 213 | 59.62% | 40.38% |
| Indica Intermediate | 210 | 49.05% | 50.95% |
| Temperate Japonica | 271 | 65.31% | 34.69% |
| Tropical Japonica | 81 | 54.32% | 45.68% |
| Japonica Intermediate | 64 | 81.25% | 18.75% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 38 | 63.16% | 36.84% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1226346598 | A->G | INTERGENIC | None |