Detailed information of SNP:
|
SNP ID:
sf1226508113(Gbrowse)
Chromosome: chr12 Position: 26508113 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1389 | 94.02% | 5.98% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 467 | 82.87% | 17.13% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 312 | 76.92% | 23.08% |
| Tropical Japonica | 90 | 96.67% | 3.33% |
| Japonica Intermediate | 65 | 92.31% | 7.69% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1226508113 | T->C | INTERGENIC | None |