Detailed information of SNP:
SNP ID:
sf1226536187(Gbrowse)
Chromosome: chr12 Position: 26536187 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1231 | 82.70% | 17.30% |
All Indica | 648 | 74.07% | 25.93% |
All Japonica | 497 | 99.40% | 0.60% |
Aus | 39 | 12.82% | 87.18% |
Indica I | 346 | 96.53% | 3.47% |
Indica II | 164 | 29.88% | 70.12% |
Indica Intermediate | 138 | 70.29% | 29.71% |
Temperate Japonica | 335 | 100.00% | 0.00% |
Tropical Japonica | 94 | 100.00% | 0.00% |
Japonica Intermediate | 68 | 95.59% | 4.41% |
Group VI/Aromatic | 11 | 100.00% | 0.00% |
Intermediate | 36 | 77.78% | 22.22% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1226536187 | A->T | INTERGENIC | None |