Detailed information of SNP:



SNP ID: sf1226536187(Gbrowse)

Chromosome: chr12

Position: 26536187
Major allele: A

Minor allele: T

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of A(major allele)Frequency of T(minor allele)
All1231 82.70% 17.30%
All Indica648 74.07% 25.93%
All Japonica497 99.40% 0.60%
Aus39 12.82% 87.18%
Indica I346 96.53% 3.47%
Indica II164 29.88% 70.12%
Indica Intermediate138 70.29% 29.71%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 95.59% 4.41%
Group VI/Aromatic11 100.00% 0.00%
Intermediate36 77.78% 22.22%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1226536187 A->T INTERGENIC None