Detailed information of SNP:
|
SNP ID:
sf1226658033(Gbrowse)
Chromosome: chr12 Position: 26658033 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 66.57% | 33.43% |
| All Indica | 799 | 42.80% | 57.20% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 66.93% | 33.07% |
| Indica II | 213 | 12.21% | 87.79% |
| Indica Intermediate | 211 | 30.81% | 69.19% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1226658033 | C->T | INTERGENIC | None |