Detailed information of SNP:
|
SNP ID:
sf1226703453(Gbrowse)
Chromosome: chr12 Position: 26703453 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1383 | 96.10% | 3.90% |
| All Indica | 763 | 93.84% | 6.16% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 363 | 95.87% | 4.13% |
| Indica II | 201 | 90.05% | 9.95% |
| Indica Intermediate | 199 | 93.97% | 6.03% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1226703453 | T->A | LOC_Os12g43050(LOC_Os12g43050.1) | Non-Synonymous SNP |