Detailed information of SNP:
|
SNP ID:
sf1226782526(Gbrowse)
Chromosome: chr12 Position: 26782526 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 90.21% | 9.79% |
| All Indica | 791 | 89.38% | 10.62% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 31.82% | 68.18% |
| Indica I | 371 | 95.15% | 4.85% |
| Indica II | 212 | 78.30% | 21.70% |
| Indica Intermediate | 208 | 90.38% | 9.62% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1226782526 | C->T | LOC_Os12g43179(LOC_Os12g43179.1) | Non-Synonymous SNP |