Detailed information of SNP:
|
SNP ID:
sf1226782531(Gbrowse)
Chromosome: chr12 Position: 26782531 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 89.72% | 10.28% |
| All Indica | 794 | 88.66% | 11.34% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 64 | 28.12% | 71.88% |
| Indica I | 371 | 94.61% | 5.39% |
| Indica II | 213 | 77.00% | 23.00% |
| Indica Intermediate | 210 | 90.00% | 10.00% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1226782531 | C->T | LOC_Os12g43179(LOC_Os12g43179.1) | Synonymous |