Detailed information of SNP:
|
SNP ID:
sf1226782804(Gbrowse)
Chromosome: chr12 Position: 26782804 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1401 | 90.72% | 9.28% |
| All Indica | 791 | 90.77% | 9.23% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 59 | 15.25% | 84.75% |
| Indica I | 372 | 93.55% | 6.45% |
| Indica II | 211 | 80.09% | 19.91% |
| Indica Intermediate | 208 | 96.63% | 3.37% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 40 | 87.50% | 12.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1226782804 | G->A | LOC_Os12g43179(LOC_Os12g43179.1) | Synonymous |