Detailed information of SNP:
|
SNP ID:
sf1226782891(Gbrowse)
Chromosome: chr12 Position: 26782891 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1408 | 90.62% | 9.38% |
| All Indica | 792 | 90.28% | 9.72% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 63 | 25.40% | 74.60% |
| Indica I | 370 | 93.24% | 6.76% |
| Indica II | 211 | 79.15% | 20.85% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1226782891 | C->G | LOC_Os12g43179(LOC_Os12g43179.1) | Non-Synonymous SNP |