Detailed information of SNP:
|
SNP ID:
sf1226792731(Gbrowse)
Chromosome: chr12 Position: 26792731 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1377 | 94.92% | 5.08% |
| All Indica | 758 | 91.29% | 8.71% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 356 | 94.10% | 5.90% |
| Indica II | 201 | 89.55% | 10.45% |
| Indica Intermediate | 201 | 88.06% | 11.94% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1226792731 | T->C | LOC_Os12g43220(LOC_Os12g43220.1) | INTRON |