Detailed information of SNP:
|
SNP ID:
sf1226833691(Gbrowse)
Chromosome: chr12 Position: 26833691 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1400 | 96.86% | 3.14% |
| All Indica | 789 | 95.56% | 4.44% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 58 | 86.21% | 13.79% |
| Indica I | 374 | 95.72% | 4.28% |
| Indica II | 210 | 94.76% | 5.24% |
| Indica Intermediate | 205 | 96.10% | 3.90% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1226833691 | C->T | LOC_Os12g43280(LOC_Os12g43280.1) | Non-Synonymous SNP |