Detailed information of SNP:
|
SNP ID:
sf1226867933(Gbrowse)
Chromosome: chr12 Position: 26867933 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1398 | 94.78% | 5.22% |
| All Indica | 792 | 99.75% | 0.25% |
| All Japonica | 484 | 85.74% | 14.26% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 368 | 99.73% | 0.27% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 325 | 81.85% | 18.15% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 65 | 89.23% | 10.77% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1226867933 | A->T | INTERGENIC | None |