Detailed information of SNP:
|
SNP ID:
sf1226893829(Gbrowse)
Chromosome: chr12 Position: 26893829 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1403 | 83.89% | 16.11% |
| All Indica | 799 | 95.99% | 4.01% |
| All Japonica | 494 | 73.48% | 26.52% |
| Aus | 55 | 10.91% | 89.09% |
| Indica I | 375 | 92.53% | 7.47% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 333 | 64.86% | 35.14% |
| Tropical Japonica | 93 | 91.40% | 8.60% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1226893829 | C->T | INTERGENIC | None |