Detailed information of SNP:
|
SNP ID:
sf1226902944(Gbrowse)
Chromosome: chr12 Position: 26902944 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1396 | 71.92% | 28.08% |
| All Indica | 791 | 89.38% | 10.62% |
| All Japonica | 485 | 54.02% | 45.98% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 367 | 81.20% | 18.80% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 327 | 48.01% | 51.99% |
| Tropical Japonica | 92 | 63.04% | 36.96% |
| Japonica Intermediate | 66 | 71.21% | 28.79% |
| Group VI/Aromatic | 11 | 36.36% | 63.64% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1226902944 | G->A | INTERGENIC | None |