Detailed information of SNP:
|
SNP ID:
sf1226904479(Gbrowse)
Chromosome: chr12 Position: 26904479 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1401 | 66.24% | 33.76% |
| All Indica | 793 | 84.74% | 15.26% |
| All Japonica | 486 | 46.09% | 53.91% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 370 | 73.51% | 26.49% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 210 | 91.90% | 8.10% |
| Temperate Japonica | 332 | 41.27% | 58.73% |
| Tropical Japonica | 90 | 52.22% | 47.78% |
| Japonica Intermediate | 64 | 62.50% | 37.50% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1226904479 | C->T | INTERGENIC | None |