Detailed information of SNP:
|
SNP ID:
sf1226914135(Gbrowse)
Chromosome: chr12 Position: 26914135 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1409 | 51.60% | 48.40% |
| All Indica | 794 | 66.50% | 33.50% |
| All Japonica | 494 | 21.46% | 78.54% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 372 | 37.10% | 62.90% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 209 | 87.08% | 12.92% |
| Temperate Japonica | 333 | 31.23% | 68.77% |
| Tropical Japonica | 93 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 40 | 62.50% | 37.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1226914135 | A->G | INTERGENIC | None |