Detailed information of SNP:
|
SNP ID:
sf1226914245(Gbrowse)
Chromosome: chr12 Position: 26914245 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1404 | 56.48% | 43.52% |
| All Indica | 789 | 69.96% | 30.04% |
| All Japonica | 492 | 29.27% | 70.73% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 367 | 43.32% | 56.68% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 209 | 88.52% | 11.48% |
| Temperate Japonica | 331 | 37.46% | 62.54% |
| Tropical Japonica | 94 | 11.70% | 88.30% |
| Japonica Intermediate | 67 | 13.43% | 86.57% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1226914245 | G->C | INTERGENIC | None |