Detailed information of SNP:
|
SNP ID:
sf1226914600(Gbrowse)
Chromosome: chr12 Position: 26914600 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1412 | 56.59% | 43.41% |
| All Indica | 794 | 70.15% | 29.85% |
| All Japonica | 495 | 29.49% | 70.51% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 371 | 43.94% | 56.06% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 210 | 88.57% | 11.43% |
| Temperate Japonica | 334 | 37.72% | 62.28% |
| Tropical Japonica | 94 | 10.64% | 89.36% |
| Japonica Intermediate | 67 | 14.93% | 85.07% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1226914600 | A->G | INTERGENIC | None |