Detailed information of SNP:
|
SNP ID:
sf1227026227(Gbrowse)
Chromosome: chr12 Position: 27026227 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1395 | 84.16% | 15.84% |
| All Indica | 777 | 72.97% | 27.03% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 371 | 87.33% | 12.67% |
| Indica II | 199 | 49.75% | 50.25% |
| Indica Intermediate | 207 | 69.57% | 30.43% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 82.50% | 17.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1227026227 | G->A | INTERGENIC | None |