Detailed information of SNP:
|
SNP ID:
sf1227062716(Gbrowse)
Chromosome: chr12 Position: 27062716 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 53.74% | 46.26% |
| All Indica | 796 | 42.59% | 57.41% |
| All Japonica | 497 | 78.87% | 21.13% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 76.00% | 24.00% |
| Indica II | 212 | 6.13% | 93.87% |
| Indica Intermediate | 209 | 19.62% | 80.38% |
| Temperate Japonica | 335 | 70.15% | 29.85% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1227062716 | A->C | LOC_Os12g43630(LOC_Os12g43630.1) | INTRON |
| sf1227062716 | A->C | LOC_Os12g43630(LOC_Os12g43630.2) | INTRON |