Detailed information of SNP:
|
SNP ID:
sf1227082266(Gbrowse)
Chromosome: chr12 Position: 27082266 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 53.28% | 46.72% |
| All Indica | 799 | 42.43% | 57.57% |
| All Japonica | 497 | 78.27% | 21.73% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 76.00% | 24.00% |
| Indica II | 213 | 6.10% | 93.90% |
| Indica Intermediate | 211 | 19.43% | 80.57% |
| Temperate Japonica | 335 | 69.55% | 30.45% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 40 | 42.50% | 57.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1227082266 | G->A | INTERGENIC | None |