Detailed information of SNP:
|
SNP ID:
sf1227152866(Gbrowse)
Chromosome: chr12 Position: 27152866 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 80.45% | 19.55% |
| All Indica | 798 | 67.29% | 32.71% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 375 | 90.93% | 9.07% |
| Indica II | 213 | 32.39% | 67.61% |
| Indica Intermediate | 210 | 60.48% | 39.52% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1227152866 | C->T | LOC_Os12g43760(LOC_Os12g43760.1) | Synonymous |